PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DEW5V
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 223aa    MW: 24633.7 Da    PI: 8.3161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DEW5VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013184203221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C++C+ ++++++ +++Hi 
  Aradu.DEW5V 184 VCTICNIVCNSQDVYNKHIA 203
                  6*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.19E-9110147No hitNo description
SMARTSM004510.26115149IPR003604Zinc finger, U1-type
SMARTSM003558.8118142IPR015880Zinc finger, C2H2-like
PfamPF128745.6E-6119142No hitNo description
SuperFamilySSF576672.68E-8179211No hitNo description
SMARTSM004510.073180214IPR003604Zinc finger, U1-type
SMARTSM003551183207IPR015880Zinc finger, C2H2-like
PfamPF128741.1E-7184207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MYPHQQQQQM QHFYPSSNPF LWASEPSIHP PGTDPVPNCS SYLSNSTLSV APSYSYAAPQ  60
STDPQNWIVK QPESVGYDAA VGSSSSMSSS LPLTYDGTWL QQIFTHETAN QTKGSKSMRC  120
EVCKIDCNSK DVYEKHIFGK KHKKNMQITA NPMLANVQSQ TSVCSEVKKR KLSNGGAPVD  180
STKVCTICNI VCNSQDVYNK HIAGKKHAAQ VNCNLNYPFV FDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937889.11e-144PREDICTED: zinc finger protein 346-like
TrEMBLA0A072UVJ51e-53A0A072UVJ5_MEDTR; C2H2 type zf-met: zinc-finger protein
STRINGVIT_17s0000g06830.t013e-26(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF891133